If moving from share

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This is the current set of procedures for moving content from Share to long term storage, and linking them into manifests for LOCKSS.

These steps should happen, in order on a regular basis; weekly if content is available:


TO MOVE CONTENT TO STORAGE

ACCESS and IDENTIFICATION


1) ssh to  libcontent1.lib.ua.edu.
2)  To get root access, run: sudo su  (if you do not have sudo access, you cannot do this process)
3)  To get access to the share drive from the libcontent1 Linux server, run:
 mount -t cifs -o username=jlderidder,domain=lib //libfs1.lib.ua-net.ua.edu/share/Digital\ Projects/ /cifs-mount
 and type in your password to the share drive.  (substitute your own username there in the line above)


MOVE TO LINUX SERVER


4)look under /cifs-mount for content in share directory.
  Copy it over to /srv/deposits/content/.
  for example:
  cp -r /cifs-mount/Digital_Coll_Complete/u0003_0002121_Aston_1939 /srv/deposits/content/.
  This does a recursive copy of the entire specified directory and all its contents, and places the copy
  in the /srv/deposits/content directory on the libcontent1 server.
5) do a diff from /srv/deposits/content to the location of the content on share drive area
  to see if we got the content ok; for example:
  diff -r /cifs-mount/Digital_Coll_Complete/u0003_0002121_Aston_1939  /srv/deposits/content/u0003_0002121_Aston_1939
  look at the output:  if none, it's a match.  If there's a variation, recopy the specified files,
  and then run the diff again.  If it's a big directory, prepend the command with "nohup "  so the
  process will continue to run if you log off or lose your connection.  The output then will be
  in the nohup.out file in the directory where you ran the "diff" command.
6)  Once you're sure you have a clean copy (no output from "diff"), delete the specified directory from
   the share drive.  For example:  rm -r /cifs-mount/Digital_Coll_Complete/u0003_0002121_Aston_1939
   This is a powerful command, a recursive removal of a directory and everything in it,
   including subdirectories.  Be careful with it.
 7) Check to see if this collection was already released to LOCKSS harvesters.  Run "waitCheck" in /srv/scripts/storing.
    If a collection has been released, it will tell you when that was, and ask if you want to go ahead and store the new content.
    If the date is within the past 2-3 weeks, wait.  Put the content in another directory if other collections are being stored.
    If you're going ahead, tell the script yes, and it will copy the existing manifest to another file ending in "_LOCKSS_$date" where $date
    is today's date.  We need this in order to measure the size of our content in LOCKSS, as it also harvests each version of the 
    Manifest.


PREPARE CONTENT


1) look through the directories in /srv/deposits/content for anomalies, badly named things,
  and new categories --  any which are not listed on http://libcontent1.lib.ua.edu/lockss/Manifest.html
 ( this manifest is in /srv/www/htdocs/lockss/).  Anomalies might be directories which do NOT match
  the expected structure (Admin, Metadata, Scans, Transcripts) or subfolder structure beneath them;
  spaces in filenames or directories, etc.  Report any problems to Digital Services staff and arrange for corrections before
  proceeding further
 2) copy any *ocrList.txt files in Admin directory to /srv/deposits/ocrMe for separate processing


 3) RUN testDeposits (in /srv/scripts/qc;  script available here:  File:TestDeposits.txt) and look at the output 
   for problems.  If this script runs across subdirectories named "Box" or "Folder" then it will spit out an error and 
   tell you to run testBoxFolder (File:TestBoxFolder.txt) instead.  This is for collections that are digitized without
   item-level metadata, with box and folder information in the filename to assist in linking from the correct part of the EAD.
   So if you get this message, run testBoxFolder on the specified collection(s) and look at the output for any problems.


4) RUN cleanCollInfo (in /srv/scripts/qc) to clean up the collection xml record in the Admin directory of each collection. 
   More about this xml record can be found here:  Collection Information 
   This script removes Word encodings and checks for valid content.  This also puts a copy of the collection xml record 
   in the /srv/deposits/hold directory to be used later to feed the database that feeds our online list of collections
   with links, descriptions, and titles, seen here:   [Browse Digital Collections]
5) If the collection has an icon:  make sure it is in the Admin folder, named for the collection.
  For example, u0003_0002121.icon.png for the collection above.  (You will need to copy this
  to the /srv/www/htdocs/digital/images/  directory, 
  with 664 access rights "chmod 664 xyz.png"). List this icon in /srv/scripts/collstuff/icons,
  so the collToDbase script will know not to apply a default icon link.
 6) RUN waitCheck ( in /srv/scripts/storing/).  This will check to see if any of the deposited collections have been harvested by
    LOCKSS partners.  If so, this content may need to be held and staged for processing.  The script will ask if you want to 
    proceed with depositing those collections.  If you indicate yes, it will back up the manifest with a datestamp and LOCKSS
    in the file name, which will ensure that we capture the sizes of each version of manifest separately.  The size of our 
    preservation content impacts the cost of our participation in LOCKSS.

MOVE CONTENT TO ARCHIVE


1) 
 a) open /srv/scripts/storing/relocating (script available here: File:Relocating.txt) and set $test = 1.  
 b) run "relocating > look".  It will:
    i) list the files it's going to move, from where and to where in "moveme"
    ii) write the new manifests into RelocateManifests so you can see what they're going to look like
    iii) write the parent manifests to parentMans, so you can see what they're going to look like
    iv) write errors to "look" file, as well as other info
 c) Look at the output in the "look" file, and the manifests concatenated in RelocateManifests and parentMans.  
2) Make whatever repairs are necessary for script to work.  If there are any new categories (z0004?),
  then add them, and create top level manifests in those category directories (copy from like directories
  and modify to fit).
3) WARNING!  Before running /srv/scripts/storing/relocating, do a "chmod -R 755 /srv/archive".  This will enable you to 
    write to the directories as root 
4) Open /srv/scripts/storing/relocating  and edit out the line $test = 1;
5) Empty the file /srv/scripts/storing/RelocateManifests, and copy moveme to another filename;  delete nohup.out.

6) run "nohup relocating"  -- this time for real.  It will take hours;  "nohup" keeps it running even if you disconnect. 
    The output will be written to "nohup.out"  -- check it occasionally, and the 
    archive directory for errors.  This time it's really copying files into the correct location in the archive (making a 
    note of what goes where in 'moveme' for the 'checkem" script in a few steps), 
    and it versions metadata and xml files, and it links versioned
    files and tiffs and wave files into the correct manifests, and links in new collections to the manifest pages of the 
    holders (the next directory up from collections, such as u0003 for all Hoole Manuscript content).



SUPPLEMENTAL WORK, CLEAN-UP, AND QUALITY CONTROL


1) If the output tells you to modify or create manifests, do that next (if not done already)
   in top level of /srv/www/htdocs/lockss directory
   The script does NOT create the top 2 levels of manifests, as it does not have sufficient
   information about new categories to fill this in.
2) check links at http://libcontent1.lib.ua.edu/lockss/Manifest.html  -- drill down.
   If you cannot access it, modify the .htaccess file in /srv/www/htdocs/lockss to allow your IP,
   and restart the apache web server:  '/usr/sbin/apache2ctl restart'
   (be sure to change it back, and then restart the web server)
3) then run 'checkem > look' in /srv/scripts/storing  (script available here:  File:Checkem.txt) 
    -- it will use the "moveme" file to
   verify md5 sums of content that was moved,
   and delete from the deposits directory if there's a match.  If there's NOT a match, it will output
   "ERROR: "  and the error.  So look through the "look file" for problems.
   Again, if there's a lot of content, precede this command with "nohup " and then look later in the
   nohup.out file for the content that normally would go into "look".

 4) run checkArchive (script available here;  File:CheckArchive.txt) and look at ArchiveERRORS;  make repairs. 
 If needed, alter and run doubleCheck to make sure things were copied over;  checkMans to check that what's linked in 
 the Manifest actually copied; addToMans to add content that was moved but not written to the Manifest.  Problems occur
 especially when the server goes down during a transfer.  Especially be aware that dozens of tiffs may have been copying
 when it went down, meaning multiple images are corrupted or damaged.

 5)   do a "chmod -R 755 /srv/archive"  to protect the archive from unauthorized alteration until next time.
 6)  copy most recent versions of EADs for each collection in /srv/deposits/content to /srv/deposits/EADs/notInDbase for linking in new content 
 7) then go look in the /srv/deposits directory, make sure folders are clean, and delete them.
   I do this:  ls /srv/deposits/content/*
               ls /srv/deposits/content/*/*
               ls /srv/deposits/content/*/*/*
               ls /srv/deposits/content/*/*/*/*
   if you find content, there's a problem.  Solve it!!  It may be necessary to rename things and go back
     through steps 13 on  again.
   if no content:  rm -r /srv/deposits/content/*
     (this will recursively delete all content in the directory)

MAKE IT LIVE IN ACUMEN!!


  This set of steps is only necessary if staff did not upload MODS and derivatives already.
 1)  go to /srv/scripts/surfacing and run copychange (script available here:  File:Copychange.txt) 
   to create derivatives from tiffs, wave files and copy transcripts over to the web directory for access;   
 2) then run /srv/scripts/surfacing/repair  to remediate the doubles created from tiffs which include both thumbs 
     and large images.
 3) cd /home/jeremiah  and locate the MODS for what was just moved, in the MODS directory.  Run "relocate.pl" 
     to send them live.
 4) run /srv/scripts/metadata/findMissing to find out what doesn't have metadata, what doesn't have derivatives  -- 
     troubleshoot and make any necessary corrections.
 5) Either index these directories immediately from the Acumen admin interface 
  (http://acumen.lib.ua.edu/admin) or wait a little while for the cron indexer to pick 
  up the content, then check the output: http://acumen.lib.ua.edu/.  Content should appear
  already in the web directories located here:
  http://libcontent1.lib.ua.edu/content/.  See Find our content online for 
  detailed instructions.


UPDATE DATABASE WITH COLLECTION INFO



1) Then go to the collstuff directory /srv/scripts/collstuff and run: collToDbase.holdDir
 to put the collection info in the database.  This takes those cleaned-up collection xml files that were
 copied into the /srv/deposits/hold/ directory (step 12) and does a number of things.  It puts them into place
 in Acumen, so they can be used by that software to provide a collection name and a bit of info about it.  It also
 parses through the content,
 repairing encoding errors, puts the content into mysql InfoTrack.allColls, adds the expected canned link,
 and asks you for each collection and each delivery system whether or not the collection is online.
 The software will give you the expected URL to test;  if it fails, and you know the content is in the system,
 locate the correct URL and provide it to the software, which will ask for a correction.
2) Check the database entries... mysql, InfoTrack.allColls.  For example:
  mysql -u jlderidder -p
  (enter password)
  use InfoTrack;
  select * from digColls where id_2009 like "u0003_0002121" and AnalogOrDigital like "D";
  (when done, enter "quit;")
  If not okay, make repairs from command line.
3) run ocrSelected File:OcrSelected.txt in /srv/scripts/surfacing.  This will go through the *ocrList files in /srv/deposits/ocrMe, select out the items marked with a "1" -- 
    locate the tiffs, create OCR files, create directories for them, and place them live in the content directory where they belong.
4) check results, and delete files in /srv/deposits/ocrMe
5) Verify that links and display are correct.  they will show up online here: [http://www.lib.ua.edu/digital/browse].
6)  Beginning with step 3 of EADs, link new content into EADs.

The current, working version of these instructions is located here on libcontent1: /srv/scripts/metadata/storing/DOTHIS.



updated 1 July October 2011 Jlderidder

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